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OR TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934.For the transi on period fromto.Commission File No.001-36276 ULTRAGENYX PHARMACEUTICAL INC. (Exact name of registrant as specified in its charter) Delaware27-2546083(State or other jurisdic on of incorpora on or organiza on)(I.R.S. Employer Iden fica on No.) 60 Leveroni CourtNovato,California(Address of principal execu ve offices) (415)483-8800(Registrant’s telephone number, including area code) Not Applicable(Former Name, Former Address and Former Fiscal Year, if Changed Since Last Report) Securi es registered pursuant to Sec on 12(b) of the Act: Indicate by check mark whether the registrant (1) hasfiled all reports required to befiled by Sec on 13 or 15(d) of the Securi esExchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required tofile suchreports), and (2) has been subject to suchfiling requirements for the past 90 days.YES☑NO☐ Indicate by check mark whether the registrant has submi ed electronically every Interac ve Data File required to be submi edpursuant to Rule 405 of Regula on S-T (§ 232.405 of this chapter) during the preceding 12 months (or for such shorter period thatthe registrant was required to submit suchfiles).YES☑NO☐ Indicate by check mark whether the registrant is a large acceleratedfiler, an acceleratedfiler, a non-acceleratedfiler, a smallerrepor ng company, or an emerging growth company. See the defini ons of “large acceleratedfiler,” “acceleratedfiler,” “smallerrepor ng company,” and “emerging growth company” in Rule 12b-2 of the Exchange Act. Large acceleratedfiler☑Non-acceleratedfiler☐ Acceleratedfiler☐Smaller repor ng company☐Emerging growth company☐If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transi on period for complying with any new or revisedfinancial accoun ng standards provided pursuant to Sec on 13(a) of the Exchange Act.☐ Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).YES☐NO☑ As of May 1, 2025, the registrant had94,542,035shares of common stock issued and outstanding. ULTRAGENYX PHARMACEUTICAL INC.FORM 10-Q FOR THE QUARTER ENDED MARCH 31, 2025INDEX CAUTIONARY NOTE REGARDING FORWARD-LOOKING STATEMENTS1 Item 2.Management’s Discussion and Analysis of Financial Condi on and Results of Opera ons21Item 3.Quan ta ve and Qualita ve Disclosures About Market Risk31Item 4.Controls and Procedures32 CAUTIONARY NOTE REGARDING FORWARD-LOOKING STATEMENTS This Quarterly Report on Form 10-Q, or the Quarterly Report, contains forward-looking statements that involve risks anduncertain es. We make such forward-looking statements pursuant to the safe harbor provisions of the Private Securi esLi ga on Reform Act of 1995 and other federal securi es laws. All statements other than statements of historical fact containedin this Quarterly Report are forward-looking statements. In some cases, you can iden fy forward-looking statements by wordssuch as "aim," “an cipate,” “believe,” “con nue,” “could,” “es mate,” “expect,” “forecast,” “intend,” “may,” “plan,” “poten al,”“predict,” “project,” “seek,” “should,” “target,” “will,” “would,” or the nega ve of these words, or other comparable terminology.These forward-looking statements include, but are not limited to, statements about: •our commercializa on, marke ng, and manufacturing capabili es and strategy;•our expecta ons regarding the ming of clinical study commencements and repor ng results from same;•the ming and likelihood of regulatory approvals for, or commercializa on of, our product candidates;•the an cipated indica ons for our product candidates, if approved;•the poten al market opportuni es for commercializing our products and product candidates;•our expecta ons regarding the poten al market size and the size of the pa ent popula ons for our products and productcandidates, if approved for commercial use;•es mates of our expenses, revenue, capital requirements, and our needs for addi onalfinancing;•our ability to develop, acquire, and advance product candidates into, and successfully complete, clinical studies;•the implementa on of our business model and strategic plans for our business, products and product candidates and theintegra on and performance of any businesses we have acquired or may acquire;•the ini a on, ming, progress, and results of ongoing and future preclinical and clinical studies, and our research anddevelopment programs;•the scope of protec on we are able to establish and maintain for intellectual property rights covering our products andproduct candidates;•our ability to maintain and establish collabora ons or strategic rela onships or obtain addi onal funding;•our ability to maintain and establish rela onships with third par es, such as contract research organiza ons, contractmanufacturing organiza ons, suppliers, and distributors;•